All kinds of useful 911 information may be found at these sites.
911 Commission Report - why is this at the top? Because you need to know what it says, even if you want to debunk every word. Don’t miss the Staff Statements and Monographs, which include key information that doesn’t appear in the final report.
NARA - The National Archives has later versions of some 911 Commission Staff Statements and Monographs.
Cooperative Research - a major collection of 9/11-related articles and events, arranged in chronological order but searchable for whatever you need to know.
911 Timeline - A minute-by-minute attack-related timeline for September 11th, 2001. Flawed in several ways (minimal references, appears more interested in proving 911 was an inside job than simply recording the events, and a little dated as well), so we'd recommend cross-checking any information you find here.
The Avalon Project - This Yale page has links to a variety of post-911 statements and documents. Most relate to statements of support from outside the US, House Resolutions and so on, but there are one or two interesting items that we'd not seen elsewhere.
September 11 Web Archive - A collection of approximately 25,000 911-related Web site "impressions" from shortly after the attacks. More about the mood of the time than conspiracies, but if you've the time to spend browsing then you might find something.
Oh Lucy -- Mike Ruppert's September 11th timeline. “If CIA and the Government weren’t involved in the September 11 attacks, what were they doing”?
Whatdidntreallyhappen - “David Corn may not have the space to devote to Ruppert’s entire timeline – which contains most of his purported "evidence" of government foreknowledge of, and complicity in, the 9/11 attacks. But I do. From the top…”